Publicly Available Tools

Most of the bioinformatic tools we develop are available to Barr Lab and collaborators. Below are tools that are presently available to the public. They are continously being maintained and new ideas are welcome. Should you have comments, questions or suggestions, contact the maintainer.

BLISIP and BLISIPHA

These tools are for the identification, quantification and illustration (in the form of heatmap) of retroviral integration sites. Registration is needed to access both tools.

gate io login

GQUAD is an R package for identifing intramolecular non-B DNA motifs.

Non-B DNA Predictor

Non-B DNA Predictor is a web-based application for identifing intramolecular non-B DNA motifs.

Cite Our Tools:

Ajoge HO, Renner TM, Bélanger K, Greig M, Dankar S, Kohio HP, Coleman MD, Ndashimye E, Arts EJ, Langlois MA, Barr SD. Antiretroviral APOBEC3 cytidine deaminases alter HIV-1 provirus integration site profiles. Nat Commun. 2023 Jan 10;14(1):16. doi: 10.1038/s41467-022-35379-y.